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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctatcttaccttccacatatggaatcaatatgtgtgcatgtgagcacttgcattcataattatccttttactttgatggttgtctcactatcatttgtatcttaatttattttctgcagCAACAAAAATGCCAAAGATGACAGCTGCAGCAGGCCTTCTTGCATGGTTTGGAGTTTTACTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAG

Basic information

species Glycine max
transcript GLYMA13G23230.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 6
gtatctatcttaccttccacatatggaatcaatatgtgtgcatgtgagcacttgcat-tcat--aattatccttttactttgatggttgtctcactatcatttgtatcttaatttattttctgcagCAACAAAAATGCCAAAGATGACAGCTGCAGCAGGCCTTCTTGCATGGTTTGGAGTTTTACTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAG
                                  | | | | | ||| | ||||||| | ||  || |  ||||||   |  ||  |   || |   |  ||||| | ||    |||   ||| |||| || || ||||   | | || ||||     ||||| |||||||||||||| || || |||||||||| ||| || || ||||||||||  ||||||| 
---------------------------------gtattttcct-tgaac-cttgcatgtgatggaactggccttttctatcaatattgtacttatactgctttgtttttt---ctatgg-ctgtagCATCAGAACTGCCCGGGTTAACGGCTGGCTTTGGCCTCCTTGCATGGTTTGGTGTCTTCCTTGCAAGTGCTGGATTAGTTATGTTTTACAAATGTAGCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttactttgatggttgtctcactatcatttgtatcttaatttattttctgcagCAACAAAAATGCCAAAGATGACAGCTGCAGCAGGCCTTCTTGCATGGTTTGGAGTTTTACTTGCAAGTGTTGGTTTGGTGATGTTTTACAGGTGTAGCAG
                                   tcttaat  putative branch site (score: 3)
                                         tttattttct  CT-rich tract
                      actatcatttgtatct  TA-rich tract