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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggtttctcccttgaattggcaggacagaaagtataggctatttatgaccaaaattcttatgtgtgtccattgcagAAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACCTCAACACTTTTATGTTCTATTGTATTGTGT

Basic information

species Glycine max
transcript GLYMA13G21440.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192302333|gb|FG995873.1|FG995873
EST:     GACCAGCCAATCTTTTCATGAAAATGTTCATGGAGATTATGAGAAACAGG                         AAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTC
genomic: GACCAGCCAATCTTTTCATGAAAATGTTCATGGAGATTATGAGAAACAGGgtaaggtttc ... tccattgcagAAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggacagaaagtataggctatttatgaccaaaattcttatgtgtgtccattgcagAAGGTGTCCTTGTATAAGAAGATATATGTGATTTACAGCTTCTTCTTTGTCCGGAAGGTCGTGGCCCACCTCAACACTTTTATGTTCTATTGTATTGTGT
                             aaaattcttat  TA-rich tract