1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcttccttctaccattcagaatacataatatacagtgacagtaacaggacaaccatattccatcactgaaccgaacgtccattattaaataagtaaaacttgaataaatattgatgaagtacaggccttaatccggtgcttaatgatccatccttattgaaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATAAGAAAGTGGTTGTCTATGAAGAAAGTTT
species | Glycine max |
transcript | GLYMA13G20210.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|254347040|gb|GR856710.1|GR856710
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|254347039|gb|GR856709.1|GR856709
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|209720200|gb|BW674538.1|BW674538
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|209701647|gb|BW673133.1|BW673133
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|213616823|gb|DB977022.1|DB977022
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|5761343|gb|AI966702.1|AI966702
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATEST: gi|17963382|gb|BM270132.1|BM270132
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
EST: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTG GAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
genomic: ACTGTTCATCTGAGCAAAGTCAAGAAGAAGAAACTTGTGCAATCTGTCTGgtatgcttcc ... aaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACAT
tgaagtacaggccttaatccggtgcttaatgatccatccttattgaaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATAAGAAAGTGGTTGTCTATGAAGAAAGTTT
gcttaat putative branch site (score: 4)
ttattgaaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttccttctaccattcagaatacataatatacagtgacagtaacaggacaaccatattccatcactgaaccgaacgtccattattaaataagtaaaacttgaataaatattgatgaagtacaggccttaatccggtgcttaatgatccatccttattgaaaattgcagGAAGAATACAAGAACATGGACGATGTTGGGACGCTGAAAGCTTGTGGACATGATTACCATGTGGGTTGCATAAGAAAGTGGTTGTCTATGAAGAAAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA