1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgatgatttagtgttattgttttgtattgttcagaattattttttttaagatggatgactgtttaatttttaaaagtcttttgctacagGTACAATGCAGCCTTAAACCCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCT
species | Glycine max |
transcript | GLYMA13G19870.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
aattattttttttaagatggatgactgtttaatttttaaaagtcttttgctacagGTACAATGCAGCCTTAAACCCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCT
gtttaat putative branch site (score: 4)
tcttttgct putative PPT
tgtttaatttttaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgatgatttagtgttattgttttgtattgttcagaattattttttttaagatggatgactgtttaatttttaaaagtcttttgctacagGTACAATGCAGCCTTAAACCCTAAGAAATCTCCCACTGGATGTGTTGGAAGCAATTCTCCTCATAATAATAGCTTAGAAGTTACAAAGAAAGATTCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA