1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
species | Glycine max |
transcript | GLYMA13G19500.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGGAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTEST: gi|193629526|gb|FK574960.1|FK574960
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
EST: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCAT GACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
genomic: AACGACTTTCTTCCTGCCTCAGCTGCCTATGAAGCGATCAAGCATTCCATgtaagtagca ... ttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATT
attcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
cctttttattttgtt CT-rich tract
atatgaagtttaaaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagcagccatctgattcatgatcactaaaccgttttttatccattaagtaatgggtaattgatcactttaactcgtccaattttgacattttttttaaaaatgttttaaggtttcaattttaatacttctctttttattcatgcgcaagaatgatatgaagtttaaaacctttttattttgttgtgagaagGACCTTATATGCGGAATACGTTGTGGAGAACTTGAGGCGGTAGTGTTGATTCCTGGGTGCTTGGAATTTTGTTTGGTTGTGAAGACATACATTACATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA