1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attgatatttaaaatgtgttctttaatctttatatttttatgaagtacaagcaatctgatagcaatgcccggattttcagaagttaattcttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAA
species | Glycine max |
transcript | GLYMA13G18670.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAG ATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCEST: gi|192315781|gb|FK008491.1|FK008491
genomic: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCC
EST: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGA-G ATAGTAAATTGGAAA-CTTACTTGAAATTTCCTGA-GA-GCTAGG
genomic: TGGGATATCCACCTTTTTATTCTGATGATCCAATGTTAACATGTAGGAAGgtaatctttt ... ttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGG
tacaagcaatctgatagcaatgcccggattttcagaagttaattcttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAA
agttaat putative branch site (score: 4)
ttcttttgt CT-rich tract
aagttaattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgatatttaaaatgtgttctttaatctttatatttttatgaagtacaagcaatctgatagcaatgcccggattttcagaagttaattcttttgtgcagATAGTAAATTGGAAAACTTACTTGAAATTTCCTGAAGAAGCTAGGCTATCCCCAGAAGCTAAAGATCTTATTAGTAAACTTTTGTGTAATGTCAATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - tgtgttc
- - - - - - - - - - - - - - - - - - - tatgaag
- - - - - - - - - - - - - - - - - - - - - - -tacaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgcc