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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgaaatcgtcacttcatttctacatttattctcttgcagattttggtgttttttgtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193400330|gb|FK367929.1|FK367929
EST:     AGGGGATTTGGATTTGTTTTCTTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGGGGATTTGGATTTG-TTTC-TTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193440423|gb|FK407172.1|FK407172
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208226527|gb|GE028192.1|GE028192
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193402169|gb|FK370216.1|FK370216
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208294750|gb|GE093869.1|GE093869
EST:     TTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: TTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208140082|gb|GD936902.1|GD936902
EST:     TTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: TTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|208196836|gb|GD995831.1|GD995831
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|207826074|gb|GD799815.1|GD799815
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|7029172|gb|AW458955.1|AW458955
EST:     AGACAGGCCGTGCCAGGGGATTTGGATTTGTTTGTTTTCGGAATCAGCAG                         GATGCCCAAAGGGCTATA
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATA
EST: gi|193625489|gb|FK577477.1|FK577477
EST:     AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|193377660|gb|FK341436.1|FK341436
EST:     GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: GGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
EST: gi|42723064|gb|CK768963.1|CK768963
EST:     AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAG                         GATGCCCAAAGTGCTATAAATGATTTGACTG
genomic: AGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGgcatgaaatc ... aatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttttccattctaatttatcaggatgttttggttctgtgattcaatttatcagGATGCCCAAAGTGCTATAAATGATTTGACTG
          ttctaat  putative branch site (score: 2)
         attctaatttatca  TA-rich tract