1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tatctccatgtgaattgcatttgttattttttttattctgagagcaaggtctttcacatttttatttgcatgtattttgttttatgaactgctcttttagCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAAC
species | Glycine max |
transcript | GLYMA13G16560.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTTCAAGAGCTTAGCATATTTCCTGGTTGCCCCTACATTATGTTACCAG CCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAAEST: gi|27809171|gb|CB063593.1|CB063593
genomic: GCTTCAAGAGCTTAGCATATTTCCTGGTTGCCCCTACATTATGTTACCAGgtagcagtac ... gctcttttagCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAA
EST: GCTTCAAGAGCTTAGCATATTTCCTGGTTGCCCCTACATTATGTTACCAG CCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAA
genomic: GCTTCAAGAGCTTAGCATATTTCCTGGTTGCCCCTACATTATGTTACCAGgtagcagtac ... gctcttttagCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAA
aaggtctttcacatttttatttgcatgtattttgttttatgaactgctcttttagCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAAC
ctgctctttt CT-rich tract
atttttatttgcatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctccatgtgaattgcatttgttattttttttattctgagagcaaggtctttcacatttttatttgcatgtattttgttttatgaactgctcttttagCCAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGCTGTTTCGCCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGATTTATAATAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - -ccatgtg
- - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - -ttctgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgaac