1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttgtgatcttttattttcacctcaagtgtacctgccagattgtctcatctcactgtctgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG
species | Glycine max |
transcript | GLYMA13G05700.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAAATGAG GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGEST: gi|208218482|gb|GE020490.1|GE020490
genomic: TGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATAC-AAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAG
EST: CTTAGCAACAGGATACAAAATGAG GGTACTGTAACATACTATTTGTTTATTGGACAACCGGTTTCGTGTTTCGAGEST: gi|193323651|gb|FK290503.1|FK290503
genomic: CTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTG-TTATTGGACAACCGGTTTCGTGTTTCTAG
EST: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTEST: gi|193727656|gb|FK664496.1|FK664496
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTEST: gi|193621277|gb|FK566803.1|FK566803
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAG GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTEST: gi|208219813|gb|GE018937.1|GE018937
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
EST: CTTAGCAACAGGATACAAAATGAG GGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCGAGT
genomic: CTTAGCAACAGGATACAAAATGAGgtttgtgatc ... tgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGT
attttcacctcaagtgtacctgccagattgtctcatctcactgtctgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG
atctcac putative branch site (score: 3)
tgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtgatcttttattttcacctcaagtgtacctgccagattgtctcatctcactgtctgtatttcagGGTACTGTAACATACTATTTGTTATTGGACAACCGGTTTCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAAGAGACAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA