Sequence
atgc intronic sequence ATGC exonic sequence...atgtatttttctttggttatctaatcatggcagtatacttttctttgtggtatccttaaaagaatatttctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
Basic information
species | Glycine max |
transcript | GLYMA13G03280.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os11g06880.1 (Oryza sativa), 3'ss of exon 3
atgtatttttctttggttatctaatcatggcagtatacttttctttgtggtatccttaaaagaatatt-tctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
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gtttattttggttttctccttca-tgttgagattcagaagattaatatcttatccctcagatcttattctttcctaacgtaatatgaattgtatatgatagTTGATAGATTGGGCTGAAGGTGGATATTTAACTAATGATTCACCAATGCCTCGGGGTGAAATAGTTATTGGAGGTCCAAACGTGACAAAAGGCTACTTTA
upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G117064_T01 (Zea mays), 3'ss of exon 6
atgtatttttctttggttatctaatcatggcagtata--cttttctttgtggtatccttaaaagaatatttctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
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--ttttattcgtatggtttctttcattttgtggtatgagttatttcccttggtttcagacgcaatattgttttcctaacataatttcaatcacgcattatagTTGATAGACTGGGCCGAAGGTGGATACTTAACAACCGATTCACCAATGCCTCGGGGTGAAATAGTTATTGGAGGTCCAAATGTAACTAAAGGCTACTTCA
upper sequence: GLYMA13G03280.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G77590.1 (Arabidopsis thaliana), 3'ss of exon 8
--atgtatttttctttggttatctaatcatggcagtatacttttctttgtggtatccttaaaagaata-tttctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
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gtaacctctttacctgatttgtccacttttaatactttg-ttagctatttattagtttgtatgtcgtagtctcttgtgatcatatgcttatatcttgtttcagCTAGTAGACTGGGCGGAAGGTGGGTATCTAACTAGTGATAAGCCGATGCCCCGTGGTGAAATTGTAATTGGTGGCTCAAATATCACGCTTGGGTATTTCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtggtatccttaaaagaatatttctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
ttttcttacctc CT-rich tract
ttaaaagaatatttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtatttttctttggttatctaatcatggcagtatacttttctttgtggtatccttaaaagaatatttctcatactaacatttgattttcttacctcagCTAATAGACTGGCCTGAAGGTGGATATTTAATCAATGACTCACCAATGGCCCGTGGTGAAATTGTAATTGGAGGTCCAAATGTCACTCTCGGGTATTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG