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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatagGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAG

Basic information

species Glycine max
transcript GLYMA13G02420.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G02420.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ10043 (Selaginella moellendorffii), 3'ss of exon 7
gtatgtgctgtctccatatttcttgacatttttcttgtgtttccatgccattgtttccttcactactttcttcccccattcccctcacaagtaaggtttct-tataacaattgctgccatatagGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAG
                                                                |   |        |  |      |||||    | | | | |    |||| ||   |  |||  | ||  |    || || ||||| ||  | || || ||  |   |||||||||||||||||| ||||||||||| ||  ||| || 
-------------------------------------------------------------gtaagcctgacaaatgaaacgagctgcaagtttattctttctctctttattgttgtt-tccagGCATGCTCACTGTCACTCTGGCTCGGCATAGATCCAAGCCTCGCGCCTACATTGGATGTATGAAGTCTGGACCTGTCCTGGCTCAAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401991|gb|EV271804.1|EV271804
EST:     GGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAG                         GTGTACTTGAAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACA
genomic: GGATGCGGATTTCTATGTCAAAGTGGATGATGATGTCCATGTCAATTTAGgtatgtgctg ... tgccatatagGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcccccattcccctcacaagtaaggtttcttataacaattgctgccatatagGTGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCAAGGATCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAG
                                ttataac  putative branch site (score: 2)
                            tttcttataacaatt  TA-rich tract