1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gcttagggtgatggtaggatggaaatgttttcagatagctcaattgaatctctaatctgtatatctgagcattcacagaatatcctgttatattttacagGAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAG
species | Glycine max |
transcript | GLYMA13G01360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAAGTTGCAAGTTATGAAGGCGTGTACTATAATTACTTCAGCATAG GAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACEST: gi|302141303|gb|HO212179.1|HO212179
genomic: AGAGAAAGTTGCAAGTTATGAAGGCGTGTACTATAATTACTTCAGCATAGgtactttgtt ... tattttacagGAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAAC
EST: ACTATAATTACTTCAGCATAG GAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAAC
genomic: ACTATAATTACTTCAGCATAGgtactttgtt ... tattttacagGAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAAC
gaatctctaatctgtatatctgagcattcacagaatatcctgttatattttacagGAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAG
ctctaat putative branch site (score: 3)
tgttatattttaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttagggtgatggtaggatggaaatgttttcagatagctcaattgaatctctaatctgtatatctgagcattcacagaatatcctgttatattttacagGAATGGATGCCCAAGTGGCTTATGGCTTCCATCATCTACGCAATGAAAAACCTTACCTTGCTAGTGGTCCAATTTCAAATAAG
- - - ggtgatg
- - - - - - - - ggatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattca