Sequence
atgc intronic sequence ATGC exonic sequencegtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
Basic information
species | Glycine max |
transcript | GLYMA13G01190.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os02g54510.2 (Oryza sativa), 3'ss of exon 5
gtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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------------------------------------------------------------gtattacttgtttaatcaaagaacactatgattcttttattctcaaatatccaaattctaaatta-aagcaactgcacagGACAATTGATCGCCGTAAAAGAGTTATATTAGCCATGGATGCTGCATTTGGCATGGAATATTTGCATGGGAAGAATATAGTTCATTTTGATCTAAAGTGT
upper sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G052658_T01 (Zea mays), 3'ss of exon 4
gtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgttt--attctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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------------------------------------------------------gtact-atatattgaatccaagaaataagaatattt---gatcttttatttctcctgtatcgaactctaaattaaagcgcttgtgcagGACAATTGATCGCCGGAAGAGAGTAATATTAGCCATGGATGCTGCATTTGGCATGGAGTATTTGCATGGGAAGAATATAGTCCATTTTGACCTGAAATGT
upper sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G039106_T03 (Zea mays), 3'ss of exon 3
gtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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------------------------------------------------------gcactacattttctaaagcaagaaataagaatatatttggtct-----tctatttctcct-ttatcaaaataaagcacttgtgcagGACAATAGATCGCCGGAAGAGAGTAATATTAGCCATGGATGCTGCATTTGGCATGGAATATTTGCACGGGAAGAATATAGTCCATTTTGACCTGAAGTGT
upper sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G57610.1 (Arabidopsis thaliana), 3'ss of exon 5
gtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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----------------------------------------------gtaaaaaagt-ttcacctattcatgcatt-atat-actattttcctagagtatccaattatctgacatcacattggttg-----actcctccagAACTATTGATCGTCGCAAAAGACTCATCATAGCCATGGATACTGCATTTGGGATGGAGTATTTGCACGGAAAGAACATTGTTCATTTCGATTTGAAGTGT
upper sequence: GLYMA13G01190.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0052g01480.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------gtaacttgatgcatgcatgggcttatatttcatcaatatttaa---tatgttttaaggca----ctcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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gtaattgttttgatggtggtttactgaattgcagtttatgagtccttttaactttcttctgttttaggatgtaggctataaagcatatacttagaagtgctcattttttgctgaaaagaa--atgaaaaatttatttcctgtggaatgtgacaattttatgctattgaacagGACAATAGATCGTCGGAAGAGACGCATCATAGCTATGGATGCTTCATTTGGAATGGAGTATTTACATGGCAAGAATATTGTACATTTTGACTTAAAATGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19269993|gb|BM886249.1|BM886249EST: GAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAG AACAATAGATCGTCGTAAGAGGCTCATTATAGCCATG
genomic: GAGTTCATGATTAATGGATCTTTGAAACAGTTCTTGCATAAGAAAGATAGgtaacttgat ... aatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
tgatgtattatttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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gtaacttgatgcatgcatgggcttatatttcatcaatatttaatatgttttaaggcactcaaatgtgcagccttccatatgaaaaccctcatggactggtgatgtattatttatgctgtttattctgagcaatttaacagAACAATAGATCGTCGTAAGAGGCTCATTATAGCCATGGATGCTGCATTTGGGATGGAGTATTTGCATGGAAAAAACATTGTTCATTTTGATTTGAAATGT
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