1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctgtttcaattttgttgtctgggtattcaaatcattcgtaatagtagaatataaaagcattcccacgccactgatattgaatttttctatattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG
species | Glycine max |
transcript | GLYMA12G36950.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAG GCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTEST: gi|18040641|gb|BM308944.1|BM308944
genomic: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctca ... tattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT
EST: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGGCATTGAG GCAATGAATGGACCATATCTTTGCAATCGTCCAATTACAGTGTCATATGCT
genomic: TTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGgtatgcctca ... tattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCT
tagaatataaaagcattcccacgccactgatattgaatttttctatattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG
cactgat putative branch site (score: 3)
tttttctatatttt putative PPT
tgatattgaatttttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctgtttcaattttgttgtctgggtattcaaatcattcgtaatagtagaatataaaagcattcccacgccactgatattgaatttttctatattttgtagGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGTGAACGGCATGGTACCCCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
-ctgtttc
- - - - - - -tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gccactg