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...caaggataatacactttatcttaattgagatccagagatttcatgtatattgtattcagagaatttggaccattgactactggctcattttttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTGATGATGCTGGGAAAGAGGAAGTCGTTGCTGCACTCGTTGCCAATGTGA
species | Glycine max |
transcript | GLYMA12G35390.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATATGATACCCCCGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAA GTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTEST: gi|19269465|gb|BM885721.1|BM885721
genomic: CATATGATACCCCCGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAAgtaagattac ... tttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCT
EST: CGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAA GTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTEST: gi|58018251|gb|CX704993.1|CX704993
genomic: CGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAAgtaagattac ... tttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCT
EST: CATATGATACCCCCGAGACTAAAGCTGATATCAAG-TGCTTTGTTCCCAA GTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTEST: gi|22522469|gb|BU081280.1|BU081280
genomic: CATATGATACCCCCGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAAgtaagattac ... tttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCT
EST: CATATGATACCCCCGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAA GTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCT
genomic: CATATGATACCCCCGAGACTAAAGCTGATATCAAGTTGCTTTGTTCCCAAgtaagattac ... tttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCT
tatattgtattcagagaatttggaccattgactactggctcattttttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTGATGATGCTGGGAAAGAGGAAGTCGTTGCTGCACTCGTTGCCAATGTGA
cattgac putative branch site (score: 3)
ctcatttttt putative PPT
tcattttttataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaggataatacactttatcttaattgagatccagagatttcatgtatattgtattcagagaatttggaccattgactactggctcattttttataacagGTTCAGAGTGACCTTGAACAAGGGATTGCAGGTGCTGTGCCTATCCCTCCTGATGATGCTGGGAAAGAGGAAGTCGTTGCTGCACTCGTTGCCAATGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - -catgtat
- - - - - - - - - - - - - - - - - - - - - - - - - tgtattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actactg