Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtatttcattgaatatctattcttatatgaaaaatatgtgcaacatagtacatagaatttgttgacatccattatctttttgttatatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGAACTTGGGCAGTAG

Basic information

species Glycine max
transcript GLYMA12G32050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 6
---------------------------------------------gtattgtatttcattgaatatctattcttatatgaaaaatatgtgcaacatagtacatagaattt------gttgacatccattatctttttgttatatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGAACTTGGGCAGTAG
                                             |||      ||    | ||          | |  ||||| |  |  | |  |  | ||  | | |       ||    |  | ||  |  ||||| ||| | ||||||||||| ||| | ||||||||||||||||| || || ||| ||||||| || ||||| ||||| ||||||||||| | ||| |||||||||||||| |
gtaattataaaatagaacttgaatgtttttccgcaatcatcgcttgtaacaagcttagaaggatccaggaaaacaaagaaaaaaaaaattaatcccaacatatgtactcttaaaagatttgtttttaatacatacttgttttatttccagATGACAGCTGAATTCCAAGTACCTTCACCTCTAGTTCCTACTAGAGAGAGTTACTTTGTGAGGTACTGTAAGCAGCATGCTGATGGAACTTGGGCAGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193523779|gb|FK480992.1|FK480992
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|208204360|gb|GE002363.1|GE002363
EST:     CGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: CGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|208116780|gb|GD914894.1|GD914894
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|207830294|gb|GD803274.1|GD803274
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|193543148|gb|FK502453.1|FK502453
EST:     CGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: CGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|208058402|gb|GD856893.1|GD856893
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|208225945|gb|GE024544.1|GE024544
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
EST: gi|193353670|gb|FK320292.1|FK320292
EST:     GGCGGGGAATTACAACGGTGCATTGCAAGTG                         ATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC
genomic: GGCGGGGAATTACAACGGTGCATTGCAAGTGgtattgtatt ... atatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacatagtacatagaatttgttgacatccattatctttttgttatatatgcagATGACAGCAGAAGTGCAAGTACCTTCACCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGAACTTGGGCAGTAG
                    tgttgac  putative branch site (score: 3)
                               attatctttttgttat  TA-rich tract