1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagctcaaatcaaatatctactaaaaccatgatgcaataaatatttgaggaattgttaataatgaaagaaatgatgatccctttttcattaaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTG
species | Glycine max |
transcript | GLYMA12G31460.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAG ATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGEST: gi|151403689|gb|EV273499.1|EV273499
genomic: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAGgtatgggaca ... aaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGG
EST: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAG ATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGEST: gi|4289810|gb|AI437979.1|AI437979
genomic: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAGgtatgggaca ... aaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGG
EST: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAG ATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGG
genomic: AAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAGgtatgggaca ... aaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGG
tgaggaattgttaataatgaaagaaatgatgatccctttttcattaaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTG
tgttaat putative branch site (score: 3)
tccctttttcatta putative PPT
aattgttaataatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctcaaatcaaatatctactaaaaccatgatgcaataaatatttgaggaattgttaataatgaaagaaatgatgatccctttttcattaaatatgcagATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTG
- - - - - - - - - - - - - ccatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa