Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccttttgcacttgttccttcgatatattggtgacatttacatgtgtcctaagattatcttcacaactaataggaatcaatactttcgtttcattttgcagGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAG

Basic information

species Glycine max
transcript GLYMA12G29640.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29640.2 (Glycine max), 3'ss of exon 7
lower sequence: AT3G45240.2 (Arabidopsis thaliana), 3'ss of exon 9
---ccttttgcacttgttccttcgatatattggtgacatttacatgtgtcctaagattatcttcacaactaataggaatcaatactttcgtttcattttgcagGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAG---------------------------------
   |   |   ||   ||| ||   | | ||  |      |  || | |   | |  ||  || |   ||  ||  |    |||| || | |       | ||||||   ||||  |||| ||| ||||||| |||||||| || || ||||| ||||||||||||||||                                 
gtactgatgataccatttcttttcttctttttcttctccgttaatctctgtaatgtgtaatttgat--ctgctaaaacatgatacatttgat-------gaagGATGATGATGATCAACTCCGTAGATCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGAAGATCTGCAGATACGT

upper sequence: GLYMA12G29640.2 (Glycine max), 3'ss of exon 7
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 9
ccttttgcacttgttccttcgatatattggtgacatttacatgtgtcctaagattatcttcacaac---taataggaatcaatacttt-cgtttcattt--tgcagGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAG---------------------------------
   | | ||   || |    ||||   |        ||   | | | ||  | | ||||    ||    ||||  ||     ||      | | |||||  || ||||||   ||||  |||| ||| ||||||| |||||||| || || ||||| ||||||||||||||||                                 
--gtattcaaa-gtactgatgataccatttcttttcttctttttcttctccgttaatctctgtaatgtgtaatttgatctgctaaaacatgatacatttgatgaagGATGATGATGATCAACTCCGTAGATCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGAAGATCTGCAGATACGT

upper sequence: GLYMA12G29640.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ15000 (Selaginella moellendorffii), 3'ss of exon 6
ccttttgcacttgttccttcgatatattggtgacatttacatgtgtcctaagattatcttcacaactaataggaatcaatactttcgtttcatt---ttgcagGATGGCAATGACGAACTT---CGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAG---------
                                          ||  |  |   ||              | |  || ||   |||  |||| ||   |||| | | ||| |||| || |||   |||||||| ||||||||||| || ||||| ||||||||||| |||  ||         
------------------------------------------gtaccacagagtttgtggtgtggt--gttgagatgaaagttttgctttctttcttttgccgcagGGCGATGATGATCTTTTACGTCGATCTCCTGGCACTCCTGTCTTCACAGCACCAGAATGCTGTAAAGGTATTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctaagattatcttcacaactaataggaatcaatactttcgtttcattttgcagGATGGCAATGACGAACTTCGTCGATCACCTGGCACTCCAGTTTTCACTGCACCAGAATGTTGTTTAG
                  aactaat  putative branch site (score: 2)
                                    ctttcgtttcatttt  putative PPT
                                          tttcatttt  TA-rich tract