1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctaatcatgcaatgccctctcactcttagattaactcaccaaattagtgcatgagcatctgagtttgttaatttattaattgcttttctctgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGCTTATTTACAGAGAGTACTTACATTGTTCGTGAAG
species | Glycine max |
transcript | GLYMA12G23890.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGG GTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGEST: gi|7925419|gb|AW831384.1|AW831384
genomic: AAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGgtatgctgtc ... tgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAG
EST: AAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGG GTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGEST: gi|298174566|gb|HO017789.1|HO017789
genomic: AAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGgtatgctgtc ... tgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAG
EST: ATCTTCGAAGAGACATTAAGCGTCGCCTTTGTCTGGCTCTAGTGAGAAGG GTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAG
genomic: ATCTTCGAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGgtatgctgtc ... tgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAG
agtgcatgagcatctgagtttgttaatttattaattgcttttctctgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGCTTATTTACAGAGAGTACTTACATTGTTCGTGAAG
tattaat putative branch site (score: 2)
ttgcttttctct CT-rich tract
tttgttaatttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaatcatgcaatgccctctcactcttagattaactcaccaaattagtgcatgagcatctgagtttgttaatttattaattgcttttctctgaattgtagGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGCTTATTTACAGAGAGTACTTACATTGTTCGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - tcatgca
- - - - - - - ccctctc
- - - - - - - - - - - - - - - - - - caccaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - gcatctg