1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttataaatttctggaaatctatgcattaatgttgttgatacttaagatttttttgctttctttctgggatatgttatattgacttcacgtagtttctaatgtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
species | Glycine max |
transcript | GLYMA12G15470.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|10237492|gb|BE806380.1|BE806380
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|16996079|gb|BM085451.1|BM085451
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|208284980|gb|GE086942.1|GE086942
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|208074942|gb|GD875439.1|GD875439
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TGATAATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|193690271|gb|FK634568.1|FK634568
genomic: TGAT-ATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: CTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|193345633|gb|FK313744.1|FK313744
genomic: CTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTAEST: gi|22525206|gb|BU084017.1|BU084017
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTA
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|19935688|gb|BQ080542.1|BQ080542
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTTGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAGEST: gi|208096558|gb|GD892867.1|GD892867
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
EST: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAG CCATTATTTCCTGGAGAAAAACCAAGTGGACCAACTTGTGGAAAATTATCA
genomic: TTGATATCTGGTCAGCTGGTTGTGTTCTTGCTGAACTTCTTCTAGGACAGgttataaatt ... gtttgtatagCCATTATTTCCTGGAGAAAA-CCAAGTGGACCAACTTGTGGAAA-TTATCA
ctttctttctgggatatgttatattgacttcacgtagtttctaatgtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
ttctaat putative branch site (score: 2)
atatgttatattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttataaatttctggaaatctatgcattaatgttgttgatacttaagatttttttgctttctttctgggatatgttatattgacttcacgtagtttctaatgtttgtatagCCATTATTTCCTGGAGAAAACCAAGTGGACCAACTTGTGGAAATTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA