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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcttgcaactggatattgcatcaatcttgttaagtcatgcttaattaacagacttgtctctccatgtaggtccaaccatctggtttcttgcaattatctattttatttctggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG

Basic information

species Glycine max
transcript GLYMA12G11820.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g57220.2 (Oryza sativa), 3'ss of exon 6
-----------------gtttgtcttgcaactggatattgcatcaat---cttgttaagtcatgctt--aattaacagacttgtctctccatgtaggtccaaccatctggtttcttgcaattatctattttatttctggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG
                   ||    |  |  |   |  || ||||     | | |  | | |  |||  || |||       ||         |||||   |  |||||||| || || |||||||| ||||| |||||||  || ||| |||||||||| ||||||||||| |||||   ||| |||||
gtatggctgactgagtaccttactatatatttatcttatggatcagctgccatctgcactgacacttcaaactaatcctgcggttcaattcaatagGTGTTATGATCTGGTTGCTAGCCATTATCTACTTTATATCTGGTGTACCTGGAGCCTATGTGTTATGGTATCGCCCCCTTTACAATGCGATGAG

upper sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 7
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 3'ss of exon 6
gtttgtcttgcaactgg-atattgcatcaatcttgttaagtc---atgct--taattaacagacttgtctctcca---tgtaggtccaaccatctggtttcttgcaattatctattttatttctggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG
||  |||||| ||| |  | | |  | |||      | |  |   ||| |  ||||   | ||||| | | |      |||||||||||| || |||||||| || ||||||||||| || || || | ||| ||| | |||||  ||||||||||||||||||||||||| |||||
gtaagtcttggaacagttaaaatttaccaagtagactgaacctgtatgatgctaatctgctgacttatgtattttggctgtagGTCCAACAATATGGTTTCTAGCTATTATCTATTTCATATCAGGGGTTCCTGGAGCGTATGTTATGTGGTATCGCCCTCTTTATCGTGCCATGAG

upper sequence: GLYMA12G11820.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 6
------------gtttgtcttgcaactggatattgcatcaatcttgttaagt--catgcttaattaacagacttgtctctccatgtaggtccaaccatctggtttcttgcaattatctattttatttctggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG
             |||||    |  |   |  |||    ||| |||| |  |  |||  ||   |     | ||| || ||| ||||||||| || || ||||||||||| || ||||| ||  | || || | ||||||| | ||||||||||||||||| |||||||||||||| |||||
gttagtttggaactttgttcacctcccaaaccttgggg-aatattgtaaccttccataattgggtcttgaatttg-ctttccttgtagGTCCGACAATTTGGTTTCTTGCCATCATCTACTTCTTATCAGGGGTTCCAGGAGCTTATGTGTTGTGGTATCGTCCTCTTTATCGTGCCATGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10231650|gb|BE800538.1|BE800538
EST:     TCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAG                         GATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG
genomic: TCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGgtttgtcttg ... ggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaggtccaaccatctggtttcttgcaattatctattttatttctggtgctccagGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAG
                      ttgcaattatctattt  TA-rich tract