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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatacagaattttctcctcctgcataacagaactggagaattttgccttttgcaattgattggcaataactttatttttatttttatttttttaatatcagtgtgttgttcatgtactgcagGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAG

Basic information

species Glycine max
transcript GLYMA12G10530.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10530.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os07g32890.1 (Oryza sativa), 3'ss of exon 4
gtaccatacagaattttctcctcctgcataacagaactggagaattttgccttttgcaattgattggcaata-actttatttttattt-ttatttttttaatatcagtgtgttgttcatgtactgcagGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAG
                            |   |||  |  |   ||||  |    |   |   ||    ||  |  ||||   | | |    |||| | |||  |  | ||    | || || ||||||||||||||||  | |||||||||||||| ||| | || ||||||||||||   || ||||| ||||| ||| | ||   | | |||
----------------------------tcttagatgttcatttttttttcaccggacctcactttattatttatgttatgcatgtatgcccttttctgaattgccttatgaaagtaatttattgcagGCATGTGAGGTTCTATCAAAACCACAGAAGTCATTAGCATATTTGCTTGAATTATATTGTGGAGTGACCACAGACAAGACAATGCAG

upper sequence: GLYMA12G10530.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0059g00620.t01 (Vitis vinifera), 3'ss of exon 4
gtaccatacagaattttctcctcctgcataacagaactggagaattttgccttttgcaattgattggcaataactttatttttatttttatttttttaatatcagtgtgttgttcatgtactgcagGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAG
             |  | |     || |        ||   | | |||   | || |   | |||  || |   || |    |   |   || |   ||  | | |||  |  |  | |   |||||| ||||||||| ||||||||||||| |||||||||||||| || |||||||| || ||||| ||  ||||||| ||||| ||||||
------------gtgatttttcagtgtactgattttctactggaattt---tcttacttatcattaccattgtgttgaa---tgactagtttctaccaagttgattgttattctattctgaggcagGCGTGTGAGGTGTTGTCAAAACCACAAAAATCACTTGCTTACTTACTTGAAACGTATTGTGGAGTAGCAACAAACAAATTGTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttatttttatttttatttttttaatatcagtgtgttgttcatgtactgcagGCATGTGAGGTGATGTCAAAACCACAGAAATCACTTGCTTATTTGCTTGAAACTTACTGTGGTGTGACAACAAATAAATTATTACAG
     tatttttatttttatt  TA-rich tract