1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtcttttactttgacacctttatacaagttctatttccctaaaaacagtttgttacacccccaaggtttaagcaagtgttttagacctgaacgtgtgaaattaagtaaaactttgttctcattacttttttattttgagatatagctaactatttatgtgttgatgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTCTGATCTTAGTAGCGGTATGCAGATGTTACTATCAATGGGATTCAGTTA
species | Glycine max |
transcript | GLYMA12G09700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTEST: gi|17518909|gb|BM187951.1|BM187951
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTEST: gi|6913724|gb|AW395254.1|AW395254
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTEST: gi|21601847|gb|BQ612178.1|BQ612178
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTEST: gi|254325740|gb|GR838621.1|GR838621
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTEST: gi|7639261|gb|AW733587.1|AW733587
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
EST: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAA CCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
genomic: AGACAGAGAGTCCTCTACCTCAAACGCAGAACCATCATCTTCTGGAGCAAgtgagtcttt ... atgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTT
tcattacttttttattttgagatatagctaactatttatgtgttgatgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTCTGATCTTAGTAGCGGTATGCAGATGTTACTATCAATGGGATTCAGTTA
acttttttattttgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcttttactttgacacctttatacaagttctatttccctaaaaacagtttgttacacccccaaggtttaagcaagtgttttagacctgaacgtgtgaaattaagtaaaactttgttctcattacttttttattttgagatatagctaactatttatgtgttgatgagagcagCCGGTTCATCTGGCACTGATCGCAAGACGGAACATGGGAAAGAGCATGGTTCTGATCTTAGTAGCGGTATGCAGATGTTACTATCAATGGGATTCAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG