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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatttgttccagttttgattcagatatttaaaatttggttcaacagataaacttgatagtaatgcaactttcagGACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGG

Basic information

species Glycine max
transcript GLYMA12G09690.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09690.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0080g00830.t01 (Vitis vinifera), 3'ss of exon 7
------gtaaa-aatttgttccagttt---tgattcagat--atttaaaatttggttcaacagataaacttgatagtaatgc---aactttcagGACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGG
       ||    ||||| | | |  |   ||| | | ||  |  ||||   || |   |      || ||    ||  ||    ||  |  || ||| || |  |||||||| ||| |||||||||| ||||| |||||||||||||| |||||||| || |||||||||||||| |||||||| ||
gtaatcttagtcgatttgattctgaatgaatgaataaaatggaactaaaccatgatatgatcatctaatttatatgttgtgtgataatctatagAACCAAATCCACACATGGGACATCTAGCTTGGGCTGATGCTTTTGTTGTCACAGCAGATTCAGTGAGTATGATAAGTGAGGCTTGCAGCACAGG

upper sequence: GLYMA12G09690.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S82_141V6.1 (Physcomitrella patens), 3'ss of exon 7
-------------------------------------------------------------------------------------gtaaaaatttgttccagttttgattcagatatttaaaatttggttcaacaga----taaacttgatagtaatgcaactt-tcagGACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGG
                                                                                     |||  | | | | ||| ||||| | |      ||| | |||  ||     |     ||||  |  | | | ||   ||| ||||| || |||| |||| | || ||| | || ||||  |||||||||||||||||||| ||||| ||||| ||| | || || ||||||||||| ||
gtacattgtcataatattctctgacttcattgttttgttagtgatacttctcttaattctactaatatacaatttcctctttcatgtattattctat-ccaattttgttcccagagcttagattttcattttgtgggatgctaaagctcttggaattgattcttgtcagGTCCAAACCCGCACCTTGGACATCTCGCATGGGGGGATGCATTTGTTGTCACAGCTGATTCTGTTAGTATGTTGAGCGAAGCATGCAGCACAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagatatttaaaatttggttcaacagataaacttgatagtaatgcaactttcagGACCTAACCTGCACATGGGCCATTTAGCTTGGGCCGATGCATTTGTTGTCACAGCCGATTCAGTTAGCATGATAAGTGAGGCATGCAGCACTGG
                               acttgat  putative branch site (score: 5)
                                                ctttc  putative PPT
     tatttaaaatttggtt  TA-rich tract