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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaagatgctgcagattttgatgatagtaggactgcataacttctttttctaaatgagaattagagaataagagtttttatgttcttgtgtgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCA

Basic information

species Glycine max
transcript GLYMA12G09300.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G27600.1 (Arabidopsis thaliana), 3'ss of exon 7
------------------------gtattcaag----atgctgcagattttgatgatagtaggactgcataacttctttttctaaatgagaattagagaataa---gagt-ttttatgttcttgtgtgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCA
                          ||| | |     |  | ||   ||   ||||      |     | | | |||       | ||    || ||| | |   | || ||| ||||   |   |     ||||||  | |||||||| ||  | ||||||||||| || || |||||||| |||||||| || || || |||||||||||||||||||| |||||| ||||||
gtacgcatctaaactttgaatatatcatttaggttttgtatttcaagcttctctgatttctaaatcctttcaatccttacatatgacgatttctaaagactgaattgtgtatttcatgtgaataaattgca-acagATTATTCCACCACCAATCACCAGAACAGATTTCGAGAAGGTACTTGCAAGACAAAGGCCAACAGTGAGCAAGTCTGACCTTGATGTCCACGAGAGATTCA

upper sequence: GLYMA12G09300.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0080g00160.t01 (Vitis vinifera), 3'ss of exon 7
gtattcaagatgctgcagattttgatgatagtaggactgcataacttctttt-tctaaatgagaattagagaataagagtttttatgttcttgtgtgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCA
     ||  ||| ||   | | |     || ||    |  ||||  |  ||  || |  ||  |  ||   ||||   |||  |   || ||     |  | |||||||| ||||| || ||  | |  |  |||||||| || ||||| || |||||||| || || || ||||| ||||||||||| || |||||| ||||||
----acataatgatgagaactgtttgtttattatatatatataatgtgattagtccacctgcaagctaataaatatttgttgctg-atttttaacacccatgcagATCCTTCCACCCCCCATCACAAAGAATGATTTTGATAAGGTACTGGCAAGACAAAGGCCGACCGTGAGCAAATCTGACCTTGAGGTGCACGAGAGATTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207783493|gb|GD756375.1|GD756375
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGTACAAAGTA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTG-ACAAAGTA
EST: gi|208047400|gb|GD848263.1|GD848263
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|51338581|gb|CO982447.1|CO982447
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208281890|gb|GE080142.1|GE080142
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAGG                         ATCCTGCCACCACCTATATCG
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCG
EST: gi|207806154|gb|GD777903.1|GD777903
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193448882|gb|FK414671.1|FK414671
EST:     CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGGACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208073227|gb|GD870658.1|GD870658
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208223435|gb|GE022174.1|GE022174
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTA
EST: gi|193703304|gb|FK641374.1|FK641374
EST:     GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTCGACAAAGTACTTGCTAGA
genomic: GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208221241|gb|GE016375.1|GE016375
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAGG                         ATCCTGCCACCACCTATATCG
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCG
EST: gi|193655524|gb|FK601826.1|FK601826
EST:     TGCTGCGAAAGGTACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCTGCGAAAGG-ACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193711620|gb|FK647831.1|FK647831
EST:     GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTCGACAAAGTACTTGCTAGA
genomic: GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|18735120|gb|BM528575.1|BM528575
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208135424|gb|GD934491.1|GD934491
EST:     ACAAACTACAATGCAGGACCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCTACCTATATCGAGAACAGACTTTGACAAAGTACTTGCTAG
genomic: ACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACC-ACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAG
EST: gi|57575390|gb|CX548365.1|CX548365
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193574067|gb|FK528783.1|FK528783
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTT
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTT
EST: gi|193631173|gb|FK579574.1|FK579574
EST:     TGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCNCCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208286897|gb|GE089167.1|GE089167
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193476963|gb|FK442680.1|FK442680
EST:     TGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|21638607|gb|BM139639.1|BM139639
EST:     ACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGT
genomic: ACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGT
EST: gi|193500113|gb|FK465184.1|FK465184
EST:     TGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|13481345|gb|BG510688.1|BG510688
EST:     GAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: GAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208312025|gb|GE101729.1|GE101729
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAAGATTTT
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACA-GATTTT
EST: gi|193558165|gb|FK514102.1|FK514102
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208072171|gb|GD872665.1|GD872665
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|13481538|gb|BG510881.1|BG510881
EST:     AAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: AAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208154060|gb|GD951865.1|GD951865
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208180236|gb|GD973693.1|GD973693
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATA
EST: gi|207847746|gb|GD818295.1|GD818295
EST:     TGCAGGATC-TGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193484693|gb|FK449887.1|FK449887
EST:     TGCTGCGAAAGGTACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: TGCTGCGAAAGG-ACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193691009|gb|FK629308.1|FK629308
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193544011|gb|FK499368.1|FK499368
EST:     GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTCGACAAAGTACTTGCTAGA
genomic: GTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|18721136|gb|BM523322.1|BM523322
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208030668|gb|GD831156.1|GD831156
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208331754|gb|GE131865.1|GE131865
EST:     ATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: ATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193434142|gb|FK400210.1|FK400210
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGAACAAAGTACTTGCTAG
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGA-CAAAGTACTTGCTAG
EST: gi|208340184|gb|GE136978.1|GE136978
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATA
EST: gi|13482347|gb|BG511690.1|BG511690
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|58014504|gb|CX701246.1|CX701246
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|207799275|gb|GD768246.1|GD768246
EST:     CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208300887|gb|GE097782.1|GE097782
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|58023445|gb|CX710186.1|CX710186
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208327862|gb|GE124610.1|GE124610
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCG
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCG
EST: gi|208306803|gb|GE106730.1|GE106730
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208237487|gb|GE028383.1|GE028383
EST:     CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|208251162|gb|GE049613.1|GE049613
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|193509295|gb|FK467039.1|FK467039
EST:     CTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
EST: gi|13252419|gb|BG363322.1|BG363322
EST:     CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAG                         ATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA
genomic: CAGTACAAACTACAATGCAGGATCTTGCTGCGAAAGGACTTGCTTCTAAGgtattcaaga ... tgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctaaatgagaattagagaataagagtttttatgttcttgtgtgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCA
  ttctaaa  putative branch site (score: 2)
                     aataagagtttttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtattcaagatgctgcagattttgatgatagtaggactgcataacttctttttctaaatgagaattagagaataagagtttttatgttcttgtgtgctgtacagATCCTGCCACCACCTATATCGAGAACAGATTTTGACAAAGTACTTGCTAGACAAAGACCCACTGTAAGCAAGTCTGACCTTGATGTTCACGAGCGATTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG