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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagattttacatgatcaagcccttaatttattaatgcttcattgtgattaatttctgatctcatcttaatatcaccaatttaataagcagATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCCATGGTGGCTCATGCAAATCATCCTAGTGATGATGTTATATATCATGTTGGTTCCTCTGTTA

Basic information

species Glycine max
transcript GLYMA12G09270.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193649574|gb|FK596711.1|FK596711
EST:     AAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGCG                         ATACCAGCTGACAT
genomic: AAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGCGgtgagagatt ... taataagcagATACCAGCTGACAT
EST: gi|193611403|gb|FK564097.1|FK564097
EST:     AAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGCG                         ATACCAGCTGACATGG
genomic: AAGGAAAATTAACATGCTTCCTTGGAGATCTCAAAGCAATTGTTGATGCGgtgagagatt ... taataagcagATACCAGCTGACATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttcattgtgattaatttctgatctcatcttaatatcaccaatttaataagcagATACCAGCTGACATGGTGGTGAATGCAATACTTGTGGCCATGGTGGCTCATGCAAATCATCCTAGTGATGATGTTATATATCATGTTGGTTCCTCTGTTA
                              ttaatatcaccaattt  TA-rich tract