1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttgttgggaataaccgaataaaattgtatcccttatgttagccttttattttgtagctattcttttttacgcttttgctgtatgcttttgttgttgcagGACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCAAATCATGCTGATGGAAATAGAGTTTGCATTGCTTCAATACAAGATATAT
species | Glycine max |
transcript | GLYMA12G07720.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGGAGCTATCCTGTGGACACTAGCTCGATGTAAATAATCTCCAAAAGAG GACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCAEST: gi|14202149|gb|BG835826.1|BG835826
genomic: AGGGAGCTATCCTGTGGACACTAGCTCGATGTAAATAATCTCCAAAAGAGgtgagtgtta ... gttgttgcagGACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCA
EST: AGGGAGCTATCCTGTGGACACTAGCTCGATGTAAATAATCTCCAAAAGAG GACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCA
genomic: AGGGAGCTATCCTGTGGACACTAGCTCGATGTAAATAATCTCCAAAAGAGgtgagtgtta ... gttgttgcagGACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCA
tttattttgtagctattcttttttacgcttttgctgtatgcttttgttgttgcagGACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCAAATCATGCTGATGGAAATAGAGTTTGCATTGCTTCAATACAAGATATAT
cttttgtt CT-rich tract
tattctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgggaataaccgaataaaattgtatcccttatgttagccttttattttgtagctattcttttttacgcttttgctgtatgcttttgttgttgcagGACTCCCAAATATAATTACAGTTGTGTGGAGCACAGTTCTTCCGGTGGTCAAATCATGCTGATGGAAATAGAGTTTGCATTGCTTCAATACAAGATATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- tgttggg
- - - - - - - - -aataaaa
- - - - - - - - - - - - - - - -ccttatg
- - - - - - - - - - - - - - - - - - - - -gcctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct