Sequence
atgc intronic sequence ATGC exonic sequence...agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
Basic information
species | Glycine max |
transcript | GLYMA12G07570.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os05g03480.2 (Oryza sativa), 3'ss of exon 6
agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
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aaacatctcttagcggtagcttccagaaaagcaagttatgtctgtttataggtctatagacataataagcctgctagttcactaaagttgggagtttcagGTTGTGTATGCAAAAACAGATATAGCTGCTGGATCAAAAGGAATAACCGCGTTCATAATTGAGAAGGGGATGCCCGG
upper sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G052630_T02 (Zea mays), 3'ss of exon 5
------agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
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ccactccacaatcgcatcctctttgttggaagagctacttgtcttgtttctctttgca---gccataaaaccttgcca---attcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
upper sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G381051_T03 (Zea mays), 3'ss of exon 6
agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
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---------gtatttttgctcttcttacattcattcccctatgctttctgcac-tcctgt-----tatcctgctaattcatccatgttgggattttacagGTTGTTTACGCAAAAACAGATCTAGCTGCAGGGTCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGG
upper sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G052630_T03 (Zea mays), 3'ss of exon 4
------agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG-----------------------
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ccactccacaatcgcatcctctttgttggaagagctacttgtcttgtttctctttgca---gccataaaaccttgcca---attcatccatgttggggttttacagGTTGTTTATGCAAAAACAGATCTAGCTGCGGGATCAAAAGGAATAACTGCATTCATAATCGAGAAAGGGATGCCCGGGTACAGAACCACTCCATTATCTT
upper sequence: GLYMA12G07570.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g03140.t01 (Vitis vinifera), 3'ss of exon 7
agaaacaggatgctcatgtaatataa----aactatattttattatagttcagacatatgctgagaa--tgcataacacgtatttgat----tgtgttgaattgaat-cagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
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-----------tctcatataagaaagcagtagctatacactatgctgatttttccatgatttgcaaaattctcttttgtttgttagaactgatatattgaactgggttcagGTTGTTTATGCGAAAACGGATATTACAGCTCATTCAAAAGGAATTACAGCATTTATCATCGAGAAGGGAATGCCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
tatttgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agaaacaggatgctcatgtaatataaaactatattttattatagttcagacatatgctgagaatgcataacacgtatttgattgtgttgaattgaatcagGTTGTCTATGCTAAAACAGACATAACTGCTGGGTCAAAAGGCATTACTGCATTCATCATTGAGAAGGGAATGCCTGG
- - - -ggatgct
- - - - - - - catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattgtg