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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atggttccaatttcaatactttaatgcgttagtagtttcctctcccctaagctctcttatctctccctcaagttgaatatcagtgatattttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCTGCACAAAAATCGGCTTGTTGTGGTTGAGGACAAATGTTACAAATTGGAG

Basic information

species Glycine max
transcript GLYMA12G07070.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16344867|gb|BI970462.1|BI970462
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|27445922|gb|CA953045.1|CA953045
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|209706956|gb|BW653172.1|BW653172
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|193424029|gb|FK391124.1|FK391124
EST:     GAGATATAAAACAAAGGTTCTTGGTCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: GAGATATAAAACAAAGG--C-TGG-CTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|208066512|gb|GD866031.1|GD866031
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGCCAGGAGGGGCTGGACAGG
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGG
EST: gi|193332612|gb|FK297782.1|FK297782
EST:     GAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: GAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|6726591|gb|AW310945.1|AW310945
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|207755986|gb|GD728453.1|GD728453
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|26047352|gb|CA784170.1|CA784170
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAA
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAA
EST: gi|209723917|gb|BW671590.1|BW671590
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
EST: gi|254338270|gb|GR849795.1|GR849795
EST:     TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAG                         CCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT
genomic: TAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGgtatttgaac ... ttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctaagctctcttatctctccctcaagttgaatatcagtgatattttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCTGCACAAAAATCGGCTTGTTGTGGTTGAGGACAAATGTTACAAATTGGAG
                                           ttttcgtt  CT-rich tract
                                      tgatatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atggttccaatttcaatactttaatgcgttagtagtttcctctcccctaagctctcttatctctccctcaagttgaatatcagtgatattttcgttgcagCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCTGCACAAAAATCGGCTTGTTGTGGTTGAGGACAAATGTTACAAATTGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-tggttcc
- - - - - - - - - - ttaatgc