Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacacatcagttctcctctgtttctttttcttttttttggtgttaacaaactaaatgacttcttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACT

Basic information

species Glycine max
transcript GLYMA12G06920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06920.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G28800.4 (Arabidopsis thaliana), 3'ss of exon 6
-------gtaaacacatcagttctcctctgtttctttttctt---ttttttggtgttaac------aaactaaat--gacttcttttgacagACAGAT---CCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACT
        ||||||||    |  |    | || || || |||      |||| | | |        ||||  |||   | |||||||| ||||| |||   ||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  |||| ||||||||||| |||||| | ||||   
gtgagaaataaacacaagtttcttttatttttcctgttacttaaacaatttgatatgattgttctgaaaccgaatttaatttcttttgtcagACTGATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTT---

upper sequence: GLYMA12G06920.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 3'ss of exon 7
---gtaaacacatcagttctcc--tctgtttctttttctttt-ttttggtgttaacaaa-ctaaatgacttcttttgacagACAGAT---CCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACT
      || |  ||  || ||   ||  |||||| |  |||| |||   |  ||  |||  |   |   || ||||| ||||| |||   || ||||||||||||  ||||||| |||| ||||||||||||||||||||||| ||||| ||  ||||||||||||| ||| || ||||||   
gtaaagaataagtctattttctgatcattttcttctctttttgtttcattcctagtaaaattgggtttttttttttggcagACTGATGATCCATCTCAAAAGAATACACTTCTTGTTTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTATCTGTCCCATCAGGATTATCAATTT---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064105|gb|BU578878.1|BU578878
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|193525562|gb|FK478393.1|FK478393
EST:     CTTTGTTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: C-TTG-TCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|5760152|gb|AI965515.1|AI965515
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|10233625|gb|BE802513.1|BE802513
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTCTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|10844370|gb|BF067669.1|BF067669
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|120493132|gb|EH221299.1|EH221299
EST:     TTCAATGGGAAATCATGAAACCACTTCAG                         ACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
genomic: TTCAAT-GGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTC
EST: gi|7926267|gb|AW832293.1|AW832293
EST:     TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAG                         ACAAGACCCTTCTCAAAAGAATCAACTTCTTATTTTAAA
genomic: TTCTTGTCGTTTCTCAATACGTTTCAATGGAAATCATGAAACCACCTCAGgtaaacacat ... cttttgacagACA-GATCCTTCTCAAAAGAATCAACTTCTTATTTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtttctttttcttttttttggtgttaacaaactaaatgacttcttttgacagACAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACT
                                aactaaa  putative branch site (score: 2)
                                          cttctttt  putative PPT
     ttctttttcttttttt  TA-rich tract