1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tactgctttgttatgtttaatggattttccttatctgatgtttgatacttcccaaagttcaaaggtatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGCTGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
species | Glycine max |
transcript | GLYMA12G06530.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|207735023|gb|GD711994.1|GD711994
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: CGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTAEST: gi|5606459|gb|AI900493.1|AI900493
genomic: CGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGT-
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|7685136|gb|AW755784.1|AW755784
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: AGCTTTGTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAC GTTCTTATAGGGAGAGAT-TCAACAGGAGCACAAAATGACTTGGGAAAAEST: gi|58015788|gb|CX702530.1|CX702530
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGA-ATCTCAACAGGAGCACAAAATGACTTGGAAAAA
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|193675738|gb|FK614866.1|FK614866
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: CTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|23729875|gb|BU763043.1|BU763043
genomic: CTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAATTGEST: gi|208292860|gb|GE094640.1|GE094640
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: CGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCGACAAAATGACTTGGAAAAAGTEST: gi|22525362|gb|BU084173.1|BU084173
genomic: CGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGC-ACAAAATGACTTGGAAAAAGT
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|10256628|gb|BE824394.1|BE824394
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCNNATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|12688251|gb|BG154587.1|BG154587
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGEST: gi|193390477|gb|FK356425.1|FK356425
genomic: AGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
EST: CGGTCGGGCTGCTGAGCAG GTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGG-AAAAGTG
genomic: CGGTCGGGCTGCTGAGCAGgtagttttga ... gtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTG
tacttcccaaagttcaaaggtatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGCTGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
tttcccttccttgtca CT-rich tract
tatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgctttgttatgtttaatggattttccttatctgatgtttgatacttcccaaagttcaaaggtatgaaaatgatgtttcccttccttgtcactgcagGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGCTGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
tactgct
- - - - tgttatg
- - - - - - - - - - - - - - - - -tctgatg
- - - - - - - - - - - - - - - - - - - - - - - -cttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtatga