1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tctctacttccctaatatcctttacctcctaaatgtgaaattgtttgctgtacatgtggcttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTGCAAATGAGTCAACAGAAGTTTGCCTCCAATG
species | Glycine max |
transcript | GLYMA12G06450.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGTTAGCATGTTAGCCCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAAEST: gi|208030488|gb|GD828400.1|GD828400
genomic: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAA
EST: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAAEST: gi|193519741|gb|FK475828.1|FK475828
genomic: GAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAA
EST: TATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCCCATGAGCGTTCTTCTATAATAAAGGAA
genomic: TATGGCAACTACGTTGTTCAGgtttataatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAA
tgctgtacatgtggcttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTGCAAATGAGTCAACAGAAGTTTGCCTCCAATG
ccttgat putative branch site (score: 5)
tctcttgcttttggtt CT-rich tract
ttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctacttccctaatatcctttacctcctaaatgtgaaattgtttgctgtacatgtggcttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGACAAGATAGTGCAAATGAGTCAACAGAAGTTTGCCTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - cttccct
- - - - - - - - - - - - cctccta
- - - - - - - - - - - - - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggctt