1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acgacctgtaaaatagatcttggtttgccacttgttcaaagagtcccttccctcttccccagttttgcaaaatgataaatcagattccttttatatacagGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTACCGAATTAAGGTTC
species | Glycine max |
transcript | GLYMA12G06430.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACTAGTGTGTGAGATGCTTGGCACCACGGATGAAAATGAGCCTCTTCAG GCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAEST: gi|10238836|gb|BE807724.1|BE807724
genomic: TACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGgtttgttgaa ... ttatatacagGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAA
EST: TACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAG GCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAEST: gi|105633593|gb|DW246956.1|DW246956
genomic: TACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGgtttgttgaa ... ttatatacagGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAA
EST: TACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAG GCGATGATGAAAGATCAATTTGCAAATTACG
genomic: TACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGgtttgttgaa ... ttatatacagGCGATGATGAAAGATCAATTTGCAAATTACG
ccttccctcttccccagttttgcaaaatgataaatcagattccttttatatacagGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTACCGAATTAAGGTTC
ttccttttat CT-rich tract
aaaatgataaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acgacctgtaaaatagatcttggtttgccacttgttcaaagagtcccttccctcttccccagttttgcaaaatgataaatcagattccttttatatacagGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTACCGAATTAAGGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- -acctgta
- - - - - - - - - - - - -tgccact