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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaaatgggacaacaatgctttcttctttttctttctctcatcccatgcattgtcttcttttctttctacactttctcttagcaaaatattattattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA

Basic information

species Glycine max
transcript GLYMA12G06010.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv06s0004g01800.t01 (Vitis vinifera), 3'ss of exon 6
gtatcaaatgggacaacaatgctttcttctttttctttctctcatcccatgcattgtcttcttttctttctacactttctcttagcaaaatattattattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                     | |   ||   ||  || |   | | |   ||||  | |||  || |        |||     |  || ||||||  |||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || || ||||||||||| |
------------------------------------gtatggaattgaatatatagatctttgtctcttctcta-tttggctcac-------ttacc--caagatgctttgagcagGCATCATCAACATGGAAGATGGCAGGCAAGGATTGGAAGAGTTGCCGGAAACAAAGACCTCTATTTGGGAACTTTTA

upper sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ17692 (Selaginella moellendorffii), 3'ss of exon 4
gtatcaaatgggacaacaatgctttcttctttttctttctctcatcccatgcattgtcttcttttctttctacactttctcttagcaaaatattattattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                                                |  | || ||   ||  ||   | | | ||    ||     | |||    ||||||||||| || ||||||||||||||  |||| ||  ||||||| || || |||||||| ||| | ||||||||||
---------------------------------------------------------------gtaatgct-catgatcaattcatatattttttcacttcggtcttttttcccagGCATCACCAGCAGGGAAGATGGCAAGCTCGGATCGGACGAGTTGCGGGGAATAAAGATCTGTACCTCGGAACTTTCA

upper sequence: GLYMA12G06010.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ16224 (Selaginella moellendorffii), 3'ss of exon 4
gtatcaaatgggacaacaatgctttcttctttttctttctctcatcccatgcattgtcttcttttctttctacactttctcttagcaaaatattattattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                                                |  | || ||   ||  ||   | | | ||    ||     | |||    ||||||||||| || ||||||||||||||  |||| ||  ||||||| || || |||||||| ||| | ||||||||||
---------------------------------------------------------------gtaatgct-catgatcaattcatatattttttcacttcggtcttttttcccagGCATCACCAGCAAGGAAGATGGCAAGCTCGGATCGGACGAGTTGCCGGGAATAAAGATCTGTACCTCGGAACTTTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045627|gb|CA783156.1|CA783156
EST:     AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAG                         GCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAA
genomic: AAAAGCAGTGGTTTCTCCAGGGGTGCATCAATGTATCGTGGAGTTACAAGgtatcaaatg ... ctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctttctacactttctcttagcaaaatattattattattattctttgattagGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCA
                                        ttattcttt  CT-rich tract
                  tcttagcaaaatatta  TA-rich tract