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gtacatattggatcgatttctctgtatctgcgtattagaaattttgtaaatcaatcgatgtattttacttttcaagcatcactaccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAG
species | Glycine max |
transcript | GLYMA12G04460.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|208307684|gb|GE107166.1|GE107166
genomic: CGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGgtacatattg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: GTTCTCGGAAACAAGTACCAAAGCGAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193399516|gb|FK363069.1|FK363069
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGgtacatattg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|193412559|gb|FK377790.1|FK377790
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGgtacatattg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: TGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGEST: gi|22524635|gb|BU083446.1|BU083446
genomic: TGAAATAATTGATGCCAGgtacatattg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
EST: GTTCTCGGAAACAAGTACCAAAGCAAATTGCTTGAAATAATTGATGCCAG TGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
genomic: GTTCTCGGAAACAAGTACCAAAGCAAATTGTTTGAAATAATTGATGCCAGgtacatattg ... cttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGG
ctaccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAG
tttaaaatgcctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatattggatcgatttctctgtatctgcgtattagaaattttgtaaatcaatcgatgtattttacttttcaagcatcactaccaatttgcaccatcctttaaaatgcctaatatttttgtgcacttaatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGTACCTGTGCAGATCAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG