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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgaaatttaattgagttgatattgcttgataccctcactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC

Basic information

species Glycine max
transcript GLYMA12G03640.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatgttgaaatttaattgagttgatattgcttgataccctcactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC
                 |  | || |   | |  | |       |||    |  |  |  | || ||  | |||| ||   ||  | || ||| ||||| ||||| ||||| ||||||||||| ||||| || ||| |||||||  |  || |||| || ||| | ||||||||||||||||  |||||||| 
----------------gtatgctgtttacgatataaattaagtttgacacgacagtgtgtgcaacttcttacatttttttcttc-ttatgtagCTTCTTGGCTGGTGTCTTGGCATGGAAAGACCCACAGGTCTTGGTTCCTGCTCTACAAGTTGCAGAGATTTTGATGGAAAAGCTTCCTGAAACATTCTCG

upper sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 7
------gtatgttgaaatttaattgagttgatattgcttgataccctcactgattttatgggtttagaaa-atttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC
      | || || |||| ||  |      |||||  ||  | |       | |  ||      | ||||   ||||||||||||  |       | ||||||||||||||| || ||||||||||||||||| || || ||| |||||||| |  |||| ||||| || || |||||||| ||||||||||| || |||
gtacttgcat-ttcaaatatatatatacatatattttttatttcaaaggtagttactagaatgctggaaatgcttatgcattgttattacttgattctagTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCC

upper sequence: GLYMA12G03640.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
gtatgttgaaatttaattgagttgatattgcttgataccctcactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC
          | ||| ||   ||  | |||   ||        | || ||| ||    |  || || |  |  || ||  ||||    |  |||||| ||||||| || ||||||| ||| ||||| || |||||| |||||| | |  |||| ||||| ||||| |||||||||||||||   || ||||||
--------gtacttatttttcttcttcttgtgaga-------gcagaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctcactgattttatgggtttagaaaatttatgcattgttgctttgatcatatagTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCC
                  tttagaaaatttat  TA-rich tract