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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgataatagattcatatttctttgattcatttggtgatatctcaaacttttctttttgctgaaaataggatatgacaagcttgactatttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGG

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 7
gtatgataatagattcatatttct----ttgattcatttggtgatatctcaaacttttctttttgctgaaaataggatatgacaagcttgactatt-----tacttt-cagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGG
|||   |  |  ||  || |   |    ||| |||    | ||   | ||    | || |  || |   |||||         || |||     ||     | || | ||||||||||| |||||| |||  ||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||| ||||    || || |||||||
gtagattgctgaatctatttacttggtgttgtttctgaagctgcattatcgggttcttatgattacaagaaataatgagcataaatcttattctttgcatgtgctctgcagGATTGGTCAGGTCAGAATGCAAGCAGCATAGCTTCAGAGATATGTGGATTCATCACTGTCCTTTCAGGAACAATCATACTGCATGCAACAAGGGAACAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053979|gb|BM732646.1|BM732646
EST:     CTCTTACTATTATTGCCAGTGCAATAATGTTTAAG                         GATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
genomic: CTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataat ... ttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
EST: gi|7590267|gb|AW706023.1|AW706023
EST:     ATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAG                         GATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC
genomic: ATGTAATGTTCACAACTCTTACTATTATTGCCAGTGCAATAATGTTTAAGgtatgataat ... ttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttctttttgctgaaaataggatatgacaagcttgactatttactttcagGATTGGTCCGGTCAGGATGTCAGCAGCATAGCCTCTGAGATATGTGGATTCATCACTGTTCTTACAGGAACAATCATATTGCACATGACTAGAGAACAGG
                                   gcttgac  putative branch site (score: 4)
                                            tttactttc  putative PPT
                                          tatttacttt  TA-rich tract