1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcatgaatttatataaagaaacaataagatttctaatttcctaatagttgtggggctttaattcagtgttatcatgcatacattctctaaatccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCCCTCTTACTGAAAAGGGCTTACTTCCAGCAGATTT
species | Glycine max |
transcript | GLYMA12G01270.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC CAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATEST: gi|31306670|gb|CD391873.1|CD391873
genomic: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
EST: TCAA-TGGAAAA-TACGCTGTATAATATCC CAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATEST: gi|31464651|gb|CD406664.1|CD406664
genomic: TCAATTGGAAAATTACGCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
EST: GCTGTATAATATCC CAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATEST: gi|207777459|gb|GD750542.1|GD750542
genomic: GCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
EST: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCC CAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
genomic: TCATATAAGCAGACCGGTGTTCAATTGGAAAATTACGCTGTATAATATCCgtaagatttc ... atccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCAT
agttgtggggctttaattcagtgttatcatgcatacattctctaaatccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCCCTCTTACTGAAAAGGGCTTACTTCCAGCAGATTT
ctctaaa putative branch site (score: 3)
tccttgc CT-rich tract
tttaattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatgaatttatataaagaaacaataagatttctaatttcctaatagttgtggggctttaattcagtgttatcatgcatacattctctaaatccttgcagCAAGACCAGGATTTCAAAAGCCCGAGAGTAGTACACCATCAAGAAAATCATACTTGGAGCCCATCCCTCTTACTGAAAAGGGCTTACTTCCAGCAGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
-catgaat
- - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - -ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca