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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcttgcctgcttttttttccctcttatctctctttctccctcacccttttgatctttcactcctgtagtgctacttgtttgtcagctttgctattttttgtattatcatcttttttccagGTTGGCCATATCTGCTGCAGATTTGAATTTAAAGCTGATGAGGTGGCGTGCTTTGCCTTCTTTAAACTTGAATGCCTTATCTTCCATGAAGTGTCTTCTC

Basic information

species Glycine max
transcript GLYMA12G01250.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01250.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 3'ss of exon 9
gtttcttgcctgcttttttttccctcttatctctctttctccctcacccttttgatctttcactcctgtagtgctacttgtttgtcagctttgctattttttgtattatcatcttttttccagGTTGGCCATATCTGCTGCAGATTTGAATTTAAAGCTGATGAGGTGGCGTGCTTTGCCTTCTTTAAACTTGAATGCCTTATCTTCCATGAAGTGTCTTCTC
                                    |      |||  ||||||||  |    || |||| |   | |  |   |    ||||    |    || || | |   | ||| ||||||||| |||||||| ||||||||||||||||| || ||||| |||||||| ||||| ||| ||||| | |||  ||| ||  |||||||||||||||||
-----------------------------------gtatgttatcagacttttgattatatggtc-tgtaatagcattaatacatt---tttgtacctcagcgttttctgacaatgtttacagGTTGGCAATATCTGCCGCAGATTTGAATTTAAAACTAATGAGATGGCGTGCCTTGCCATCTCTAAACCTAAATATCTTGTCCACCATGAAGTGTCTTCTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtgctacttgtttgtcagctttgctattttttgtattatcatcttttttccagGTTGGCCATATCTGCTGCAGATTTGAATTTAAAGCTGATGAGGTGGCGTGCTTTGCCTTCTTTAAACTTGAATGCCTTATCTTCCATGAAGTGTCTTCTC
                                     ttatcatcttttttcc  CT-rich tract
                          tattttttgtattatc  TA-rich tract