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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttctttgctagttcacatgttatagagcgtacgaatatttttatgtaagtattctttttaaaagaaattgtaacactataaaaataatttcatttgtacacacagATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACA

Basic information

species Glycine max
transcript GLYMA12G00530.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00530.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G119265_T01 (Zea mays), 3'ss of exon 8
gtacgttttctttgctagttcacatgttatagagcgtacgaatatttttatgtaagtattctttttaaaagaaattgta-acactataaaaataatttcatttgtacacacagATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACA
                         || ||  | |  ||    |   | |         || |    ||   |  | || |||||    |  | | |     ||      |||| || || ||||||    |  | || || ||||||||||| |||||||||||||| ||||| ||  ||||||||||||| ||  | ||| |  | || ||
---------------------gtgggtcatgaaactgacagccagcgtcacccctcctctcctgaacaattcacctatatacactgcctag-tgactctgactgcgtgtgcagACTGCGAGTGGAAGAAGCGAGCCGGGAACGTGTGCGTGGCGTCCTTCGACTGGTCGTGCAGCGGCGTCTGTAAGTCGGTGGACCGGATGCGCCACATCCA

upper sequence: GLYMA12G00530.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G119265_T02 (Zea mays), 3'ss of exon 8
gtacgttttctttgctagttcacatgttatagagcgtacgaatatttttatgtaagtattctttttaaaagaaattgta-acactataaaaataatttcatttgtacacacagATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACA
                         || ||  | |  ||    |   | |         || |    ||   |  | || |||||    |  | | |     ||      |||| || || ||||||    |  | || || ||||||||||| |||||||||||||| ||||| ||  |||||||||||||                     
---------------------gtgggtcatgaaactgacagccagcgtcacccctcctctcctgaacaattcacctatatacactgcctag-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttttaaaagaaattgtaacactataaaaataatttcatttgtacacacagATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACA
                 ttgtaac  putative branch site (score: 2)
     ttttaaaagaaattgt  TA-rich tract