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...ttgatgaatttgagattatttctattgccatattcaactatatcatgctgtaagcttgtaatgtactatggtgcttgctgacacttttatttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAG
species | Glycine max |
transcript | GLYMA11G36010.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCTTTCA-CCCTCGGAAGCTTCT-AAG GTTCTTGGTCCCNTGATTGAA-CCCTGACGAAGCAACAGCGTTTGAATATCEST: gi|58020433|gb|CX707175.1|CX707175
genomic: GGCTTTCACCCCTCGG-AGCTTCTAAAGgtggtgcctc ... ttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATC
EST: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAG GTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCEST: gi|58023374|gb|CX710115.1|CX710115
genomic: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAGgtggtgcctc ... ttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATC
EST: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAG GTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCEST: gi|58023623|gb|CX710364.1|CX710364
genomic: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAGgtggtgcctc ... ttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATC
EST: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAG GTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATC
genomic: AAAGATTTTTCCTGTGGATTGGAGGCTTTCACCCCTCGGAGCTTCTAAAGgtggtgcctc ... ttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATC
tgctgtaagcttgtaatgtactatggtgcttgctgacacttttatttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAG
cttttattt CT-rich tract
acacttttatttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgatgaatttgagattatttctattgccatattcaactatatcatgctgtaagcttgtaatgtactatggtgcttgctgacacttttatttaattgcagGTTCTTGGTCCCCTGATTGAACCCCTGACGGAGCAACAGCGTTTGAATATCTATAACCTTGGACAATCATGTCAGCAAGCAGAAGATGCCCTTTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - tattgcc
- - - - - - - - - - - - - - - - - - - - - tcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttgct