1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgatgtcatcaataacatcacctttacctgcagatagacagcaaaactggcttgctgataatgtttatgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAG
species | Glycine max |
transcript | GLYMA11G34050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTAEST: gi|6455221|gb|AW185904.1|AW185904
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTAEST: gi|298172245|gb|HO021837.1|HO021837
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTAEST: gi|15663968|gb|BI701339.1|BI701339
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTAEST: gi|14205474|gb|BG839152.1|BG839152
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTAEST: gi|254341766|gb|GR852903.1|GR852903
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
EST: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAG GTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
genomic: ACTGAGGTAGAAGCACTTGTTCATGCAGTTGAGGAACTCGGAACTGGGAGgtacgatgtc ... tgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTA
tttacctgcagatagacagcaaaactggcttgctgataatgtttatgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAG
tgctgat putative branch site (score: 3)
ataatgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatgtcatcaataacatcacctttacctgcagatagacagcaaaactggcttgctgataatgtttatgccgtgcagGTGGCGTGATGTTAAGTTGCGAGCTTTTGAGAATGCAGACCATAGGACTTATGTAGACTTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT