Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatatatgctaacacttgttcggtagcttctacctgtaatgaattttgctatccgatcagtttatggtttttgttaatagGATGCCACAGTCAAGATTCTCAACCTCATGGATGGAAAACCAGATCTTATTATTGGAAATTACACTGATGGGAATTTGGTAGCATCTCTTATGGCTAACA

Basic information

species Glycine max
transcript GLYMA11G33240.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33240.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 3'ss of exon 7
-----gtatatatatgctaacacttgttcggtagcttctacctgtaatgaattttgctatcc--gatca--gtttatggtttttgttaa-tagGATGCCACAGTCAAGATTCTCAACCTCATGGATGGAAAACCAGATCTTATTATTGGAAATTACACTGATGGGAATTTGGTAGCATCTCTTATGGCTAACA
     ||  |    | | ||  ||    | ||    | | | ||   ||| |||| || |||  ||| |  ||      | |||| ||  ||||||||||||| ||||||  |  | | |||||| || |||||||| ||||| |||||||| |||||||||||||||||||| |||||||| |||||||  |
gttgagttcaatcttccgaaatctaccactgttagcttttcttggtttgagtttttctttccttgattattgtcgtctctctttgatatctagGATGCCACAGCCAAGATCATTGAGCACATGGAAGGGAAACCAGACCTTATCATTGGAAACTACACTGATGGGAATTTGGTGGCATCTCTCATGGCTACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttctacctgtaatgaattttgctatccgatcagtttatggtttttgttaatagGATGCCACAGTCAAGATTCTCAACCTCATGGATGGAAAACCAGATCTTATTATTGGAAATTACACTGATGGGAATTTGGTAGCATCTCTTATGGCTAACA
                                          tttttgtt  CT-rich tract
                                          tttttgttaata  TA-rich tract