1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caatgattgtttgtaatgatggaattgtggaacgagtttacttggttgttccaatacagatcttgacatgctttatccctttatatattttgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGACGAG
species | Glycine max |
transcript | GLYMA11G31750.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG ATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATEST: gi|192314283|gb|FK007021.1|FK007021
genomic: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtata ... tgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCAT
EST: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTG ATTGCAAG-ATTTTCCTATTCATGTTCTTTTT-ATCCACATGTGG
genomic: GCTCCAAACTTTACGTCTGGAATGGCATTGCTTTGTTCTTCGGGTGGTTGgtactgtata ... tgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGG
ttgttccaatacagatcttgacatgctttatccctttatatattttgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGACGAG
tcttgac putative branch site (score: 3)
tttatatattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatgattgtttgtaatgatggaattgtggaacgagtttacttggttgttccaatacagatcttgacatgctttatccctttatatattttgtgctgcagATTGCAAGGATTTTCCTATTCATGTTCTTTTTTATCCACATGTGGACCCATTTTGACGAG
- - - -tgtttgt
- - - - - - - -atgatgg
- - - - - - - - - - - - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -caataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgaca