1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atctcaaaaatgcatacatcaattttcttctatggtcctgaattgttcctttcttttttttaattttctctttctttttctttttgttgttccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCAGGGCCATTGCCACTTCATCTTATCAAGTACTTGCTACACAGCATAA
species | Glycine max |
transcript | GLYMA11G27190.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCG ACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAAEST: gi|58020974|gb|CX707716.1|CX707716
genomic: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGgtattaattc ... tccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
EST: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCG ACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAAEST: gi|192308421|gb|FK000917.1|FK000917
genomic: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGgtattaattc ... tccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
EST: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCG ACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAAEST: gi|58017748|gb|CX704490.1|CX704490
genomic: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGgtattaattc ... tccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
EST: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCG ACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAAEST: gi|193392559|gb|FK358718.1|FK358718
genomic: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGgtattaattc ... tccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
EST: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCG ACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
genomic: TCATCCATCACCTTTTCCCTCAGATTCCACATTATCATTTGGTTGAAGCGgtattaattc ... tccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAA
ttcctttcttttttttaattttctctttctttttctttttgttgttccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCAGGGCCATTGCCACTTCATCTTATCAAGTACTTGCTACACAGCATAA
ttttaat putative branch site (score: 3)
cttttttttaattttc CT-rich tract
ttcttttttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctcaaaaatgcatacatcaattttcttctatggtcctgaattgttcctttcttttttttaattttctctttctttttctttttgttgttccacaatagACTAAAGCAGCTAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAATCAGGGCCATTGCCACTTCATCTTATCAAGTACTTGCTACACAGCATAA
- - - - - -gcataca
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