1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctcaatggcattgtatgtaactatgattcatgaaccaacctcgcttagtgggacaaggcttttgttgttgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT
species | Glycine max |
transcript | GLYMA11G21490.1 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACEST: gi|298194263|gb|HO040911.1|HO040911
genomic: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
EST: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACEST: gi|16105648|gb|BI893388.1|BI893388
genomic: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
EST: ACACTATGTGCCAGTATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACEST: gi|57574660|gb|CX547635.1|CX547635
genomic: ACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
EST: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACEST: gi|20498067|gb|BQ272997.1|BQ272997
genomic: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
EST: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
genomic: GCTTGCCTCCTTCTTCACACTATGTGCCAGTATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACAC
tagtgggacaaggcttttgttgttgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT
ctcctgaac putative branch site
ttactttt putative PPT
ttactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaatggcattgtatgtaactatgattcatgaaccaacctcgcttagtgggacaaggcttttgttgttgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGAATCACAGACACCAATAACAGTACTTACGAGCT
ctcaatg
- - - - - -tgtatgt
- - - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - - ccaacct
- - - - - - - - - - - - - - - - - - - - - -cttagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctga