1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atcatttatattagatgctcaaactcttatttatgaatgtgctattgtgctttataatagtttaatcaattttgtgatttttttctctctggaaaagcagAATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
species | Glycine max |
transcript | GLYMA11G20690.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGAGATACTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCAT AATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCATEST: gi|208316150|gb|GE117404.1|GE117404
genomic: GGAGATACTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCATgtaatatttc ... ggaaaagcagAATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCAT
EST: CTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCAT AATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCAT
genomic: CTTGCGTGATATAGTTTCTGGATTAACATATCTCCATGCTCATgtaatatttc ... ggaaaagcagAATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCAT
tgtgctttataatagtttaatcaattttgtgatttttttctctctggaaaagcagAATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
gtttaat putative branch site (score: 4)
tttttttctctctg putative PPT
tttataatagtttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatttatattagatgctcaaactcttatttatgaatgtgctattgtgctttataatagtttaatcaattttgtgatttttttctctctggaaaagcagAATATTGTTCATCTGGATATTAAGCCAGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAG
- - - - - - - - -ctcaaac
- - - - - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - -tgcttta