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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttctagggactattttgttatattactcacaaattgattgtcattctgtcctcagtggaacattatgttactatttgttgtgctgtatttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTATCTGGACCAAGGACTACAACTATG

Basic information

species Glycine max
transcript GLYMA11G19970.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15337678|gb|BI498334.1|BI498334
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAAAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
EST: gi|192295995|gb|FG989403.1|FG989403
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
EST: gi|192324407|gb|FK015758.1|FK015758
EST:     ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTT                         GTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA
genomic: ATATTAAGGCAGTTGGTCCTCCATTTGACTACATCATTGGCACTGATGTTgtaagtgtag ... ttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgtcctcagtggaacattatgttactatttgttgtgctgtatttctttgaagGTTTATGTAGAGCATCTATTGGAGCCTCTATTACAGACAATTCTTGCTTTATCTGGACCAAGGACTACAACTATG
                                          tatttcttt  CT-rich tract
                  attatgttactattt  TA-rich tract