1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatgtgtctatttttgtttgtaggactttatcattgatttgacctccagttcttctgtcctgatgtgaaccctaatacatagtttgttcattaatttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG
species | Glycine max |
transcript | GLYMA11G15470.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAG TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACAEST: gi|11687562|gb|BF595238.1|BF595238
genomic: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGgtaatgtgtc ... atttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACA
EST: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAG TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACAEST: gi|207688666|gb|GD673369.1|GD673369
genomic: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGgtaatgtgtc ... atttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACA
EST: TAACAGAAGAGAG TGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACAEST: gi|207843904|gb|GD816035.1|GD816035
genomic: TAACAGAAGAGAGgtaatgtgtc ... atttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACA
EST: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAG TGGGTTGCCTTTAGAAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTA
genomic: AGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGgtaatgtgtc ... atttttacagTGGGTTGCCTTT-GAAAAA-GCTTGACAAGAAACTAGAAAGAACACTTTTA
gttcttctgtcctgatgtgaaccctaatacatagtttgttcattaatttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG
cattaat putative branch site (score: 3)
tttttac CT-rich tract
taatacatagtttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtgtctatttttgtttgtaggactttatcattgatttgacctccagttcttctgtcctgatgtgaaccctaatacatagtttgttcattaatttttacagTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC