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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcttaacctccaaatgaagctagatggtaggaactggggttgtcagttagtgttgctgtttctttgtacttgaacaggcttaatcattcctgtttctatcatcattggcatatttttgtataaattatttcagatttatatctcataaaatattatttatttatttaacttttgtatctaaaaatcattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGACATTTTGAAAGT

Basic information

species Glycine max
transcript GLYMA11G14760.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349007|gb|BI974602.1|BI974602
EST:     GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG                         GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: gi|4294280|gb|AI442168.1|AI442168
EST:     GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG                         GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: gi|16346854|gb|BI972449.1|BI972449
EST:     GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG                         GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: gi|7591157|gb|AW706896.1|AW706896
EST:     GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAG                         GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
genomic: GCTTCACATTCTCCTCGTCCTAAAGCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA
EST: gi|51337741|gb|CO981607.1|CO981607
EST:     GCTGACATAACTGAGCCTGTAATAAG                         GTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAANNCTGA
genomic: GCTGACATAACTGAGCCTGTAATAAGgtaatgctta ... cattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcataaaatattatttatttatttaacttttgtatctaaaaatcattattcagGTATCCCTCCAGTCCAGCTGTAATTCATCAGAGGATTCAAGGCAACTCTGACATGTTACCTGAGCATCAAGTAACCAGTTTAGGTAGACATTTTGAAAGT
                                   atctaaa  putative branch site (score: 3)
     taaaatattatttatt  TA-rich tract